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Commit 8ee49ad3 authored by Venkat Malladi's avatar Venkat Malladi
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Fix caps stragglers

parent 072003d4
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2 merge requests!95Update rna-seq.nf,!89Changed the spelling of inferred.
Pipeline #10463 failed with stages
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...@@ -812,7 +812,7 @@ process seqwho { ...@@ -812,7 +812,7 @@ process seqwho {
echo -e "LOG: concordant species inference: \${speciesInfer}" >> ${repRID}.seqwho.log echo -e "LOG: concordant species inference: \${speciesInfer}" >> ${repRID}.seqwho.log
else else
speciesErrorSeqwho=true speciesErrorSeqwho=true
speciesErrorSeqwho_details="**Inferred species does not match for R1 and R2:** Inferred R1 = \${speciesR1} and inferred R2 = \${speciesR2}" speciesErrorSeqwho_details="**Inferred species does not match for R1 and R2:** Inferred R1 = \${speciesR1} and Inferred R2 = \${speciesR2}"
echo -e "LOG: inference error: \${speciesErrorSeqwho_details}" >> ${repRID}.seqwho.log echo -e "LOG: inference error: \${speciesErrorSeqwho_details}" >> ${repRID}.seqwho.log
fi fi
...@@ -851,7 +851,7 @@ process seqwho { ...@@ -851,7 +851,7 @@ process seqwho {
fi fi
else else
seqtypeError=true seqtypeError=true
seqtypeError_details="**Inferred sequencing type does not match for R1 and R2:** Inferred R1 = \${seqtypeR1} and inferred R2 = \${seqtypeR2}" seqtypeError_details="**Inferred sequencing type does not match for R1 and R2:** Inferred R1 = \${seqtypeR1} and Inferred R2 = \${seqtypeR2}"
echo -e "LOG: inference error: \${seqtypeError_details}" >> ${repRID}.seqwho.log echo -e "LOG: inference error: \${seqtypeError_details}" >> ${repRID}.seqwho.log
fi fi
consensus="-" consensus="-"
......
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