Fix caps stragglers

43 jobs for !89 with 125-infered in 360 minutes and 18 seconds (queued for 19 minutes and 11 seconds)
latest detached
Status Job ID Name Coverage
  Integration
failed failFileStructure #141879

00:09:40

failed failMismatchR1R2 #141877

00:07:46

passed failSeqType #141880

00:28:34

failed failTrunkation #141876

00:07:46

passed failUnexpectedMeta #141878

02:58:49

passed integration_pe #141875

01:37:47

passed integration_se #141874

02:21:16

passed override_fastq #141452

00:22:00

passed override_inputBag #141451

02:14:37

passed override_species #141881

02:37:40

passed override_spike #141883

02:59:42

passed override_stranded #141882

03:45:35

failed failFileStructure #141449

00:06:00

failed failFileStructure #141519

00:06:44

failed failFileStructure #141600

00:08:28

failed failMismatchR1R2 #141517

00:08:37

failed failMismatchR1R2 #141447

00:05:58

failed failMismatchR1R2 #141598

00:07:02

failed failSeqType #141450

00:03:54

failed failSeqType #141601

00:04:54

failed failSeqType #141520

00:08:36

failed failTrunkation #141446

00:04:48

failed failTrunkation #141597

00:07:02

failed failTrunkation #141516

00:08:32

failed failUnexpectedMeta #141518

00:06:46

failed failUnexpectedMeta #141599

00:07:03

failed failUnexpectedMeta #141448

00:05:59

failed integration_pe #141445

00:05:20

failed integration_pe #141515

00:06:47

failed integration_pe #141596

00:04:58

failed integration_se #141595

00:05:05

failed integration_se #141514

00:06:48

failed integration_se #141444

00:05:23

failed override_species #141521

00:26:52

failed override_species #141453

00:28:18

failed override_species #141602

00:25:27

failed override_spike #141455

00:30:43

failed override_spike #141604

00:26:46

failed override_spike #141523

00:25:54

failed override_stranded #141522

00:37:06

failed override_stranded #141603

00:32:08

failed override_stranded #141454

00:40:10

 
  Consistency
skipped consistency #141456
 
Name Stage Failure
failed
failFileStructure Integration
    bdb.validate_bag(temp_path if temp_path else path,
File "/miniconda/lib/python3.8/site-packages/bdbag/bdbag_api.py", line 402, in validate_bag
bag_config = config['bag_config']
KeyError: 'bag_config'`, size: 5889 (max: 255)
Running after_script
Running after script...
$ unset SINGULARITY_CACHEDIR
Uploading artifacts for failed job
ERROR: Job failed: exit status 1
failed
failMismatchR1R2 Integration
    bdb.validate_bag(temp_path if temp_path else path,
File "/miniconda/lib/python3.8/site-packages/bdbag/bdbag_api.py", line 402, in validate_bag
bag_config = config['bag_config']
KeyError: 'bag_config'`, size: 5925 (max: 255)
Running after_script
Running after script...
$ unset SINGULARITY_CACHEDIR
Uploading artifacts for failed job
ERROR: Job failed: exit status 1
failed
failTrunkation Integration
    bdb.validate_bag(temp_path if temp_path else path,
File "/miniconda/lib/python3.8/site-packages/bdbag/bdbag_api.py", line 402, in validate_bag
bag_config = config['bag_config']
KeyError: 'bag_config'`, size: 6070 (max: 255)
Running after_script
Running after script...
$ unset SINGULARITY_CACHEDIR
Uploading artifacts for failed job
ERROR: Job failed: exit status 1