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Commit 645313a7 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Create 2nd test input bag for bag override

parent 10101561
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2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
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......@@ -84,7 +84,7 @@ getData:
script:
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' bdbag --version > version_bdbag.txt
- ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
- unzip ./test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip
- unzip ./test_data/bag/Q-Y5F6_inputBag_xxxxtest.zip
- singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' bash ./workflow/scripts/bdbag_fetch.sh Q-Y5F6_inputBag Q-Y5F6
- pytest -m getData
artifacts:
......
......@@ -13,8 +13,9 @@ ln -sfn ./test_data/auth/credential.json ~/.deriva/credential.json
mkdir -p ./NEW_test_data/bag
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 './Replicate_For_Input_Bag(test).json' . rid=Q-Y5F6
cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip
cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxtest.zip
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 ../workflow/conf/Replicate_For_Input_Bag.json . rid=Q-Y5F6
cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip
mkdir -p ./NEW_test_data/fastq
unzip ./Q-Y5F6_inputBag.zip
......
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