diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 420ba8c4ecab83dcd985443bd979d64dbf893c12..344138f7b7822f578f1efba09709c1c355f59709 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -84,7 +84,7 @@ getData: script: - singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' bdbag --version > version_bdbag.txt - ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt - - unzip ./test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip + - unzip ./test_data/bag/Q-Y5F6_inputBag_xxxxtest.zip - singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' bash ./workflow/scripts/bdbag_fetch.sh Q-Y5F6_inputBag Q-Y5F6 - pytest -m getData artifacts: diff --git a/test_data/createTestData.sh b/test_data/createTestData.sh index 8738c2e7c1e6f912411c5d07afabe470f96b3bdb..35fa2a4f467627a09bedd6f2675df04971c341f1 100644 --- a/test_data/createTestData.sh +++ b/test_data/createTestData.sh @@ -13,8 +13,9 @@ ln -sfn ./test_data/auth/credential.json ~/.deriva/credential.json mkdir -p ./NEW_test_data/bag singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 './Replicate_For_Input_Bag(test).json' . rid=Q-Y5F6 -cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip +cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxtest.zip singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-download-cli staging.gudmap.org --catalog 2 ../workflow/conf/Replicate_For_Input_Bag.json . rid=Q-Y5F6 +cp Q-Y5F6_inputBag.zip ./NEW_test_data/bag/Q-Y5F6_inputBag_xxxxxxxx.zip mkdir -p ./NEW_test_data/fastq unzip ./Q-Y5F6_inputBag.zip