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Commit 56f97599 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Split aws exports

parent 7c31f438
1 merge request!79Master
Pipeline #9663 passed with warnings with stages
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.gitlab-ci.yml
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...@@ -1096,10 +1096,9 @@ aws: ...@@ -1096,10 +1096,9 @@ aws:
- mkdir -p ./badges/env - mkdir -p ./badges/env
- curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-inactive-critical?style=flat > ./badges/env/aws.svg - curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-inactive-critical?style=flat > ./badges/env/aws.svg
- module load awscli/1.11.139 - module load awscli/1.11.139
- > - export AWS_ACCESS_KEY_ID=${aws_accesskeyid}
export AWS_ACCESS_KEY_ID=${aws_accesskeyid} &&\ - export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey}
export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey} &&\ - aws configure set region ${aws_region}
aws configure set region ${aws_region}
- aws s3 cp ./test_data/auth/ s3://bicf-output/ci-env/auth/ --exclude "*" --include "c*" --recursive - aws s3 cp ./test_data/auth/ s3://bicf-output/ci-env/auth/ --exclude "*" --include "c*" --recursive
- aws s3 cp ./test_data/fastq/xsmall/ s3://bicf-output/ci-env/input/ --exclude "*" --include "Q-Y5F6_10K.R*.fastq.gz" --recursive - aws s3 cp ./test_data/fastq/xsmall/ s3://bicf-output/ci-env/input/ --exclude "*" --include "Q-Y5F6_10K.R*.fastq.gz" --recursive
- > - >
...@@ -1124,10 +1123,9 @@ aws: ...@@ -1124,10 +1123,9 @@ aws:
fi fi
after_script: after_script:
- module load awscli/1.11.139 - module load awscli/1.11.139
- > - export AWS_ACCESS_KEY_ID=${aws_accesskeyid}
export AWS_ACCESS_KEY_ID=${aws_accesskeyid} - export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey}
export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey} - aws configure set region ${aws_region}
aws configure set region ${aws_region}
- aws s3 rm s3://bicf-output/ci-env/auth/ --recursive - aws s3 rm s3://bicf-output/ci-env/auth/ --recursive
- aws s3 rm s3://bicf-output/ci-env/input/ --recursive - aws s3 rm s3://bicf-output/ci-env/input/ --recursive
artifacts: artifacts:
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