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Commit 462301b3 authored by Venkat Malladi's avatar Venkat Malladi
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Updaated documents and changelog and usage statement.

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# v0.0.4 (in development)
**User Facing**
* Add option to pull references from datahub
* Add option to send email on workflow error, with pipeline error message
**Background**
* Remove (comment out) option to pull references from S3
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......@@ -43,7 +43,9 @@ To Run:
* **biohpc_max** = process on high power BioHPC cluster nodes (=> 128GB nodes), for resource testing
* **aws_ondemand** = AWS Batch on-demand instant requests
* **aws_spot** = AWS Batch spot instance requests
* `-email`x email notification on failure
* `--email` email address(es) to send failure notification (comma separated) ***(optional)***:
* e.g: --email 'venkat.malladi@utsouthwestern.edu,Gervaise.Henry@UTSouthwestern.edu'
* NOTES:
* once deriva-auth is run and authenticated, the two files above are saved in ```~/.deriva/``` (see official documents from [deriva](https://github.com/informatics-isi-edu/deriva-client#installer-packages-for-windows-and-macosx) on the lifetime of the credentials)
* reference version consists of Genome Reference Consortium version, patch release and GENCODE annotation release # (leaving the params blank will use the default version tied to the pipeline version)
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