diff --git a/CHANGELOG.md b/CHANGELOG.md index 21e53310538eb6756056fa6a43f59313817c12a8..d9de614cb1b0a85c3442a9f9f8db16fdd000aaeb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,7 @@ # v0.0.4 (in development) **User Facing** * Add option to pull references from datahub +* Add option to send email on workflow error, with pipeline error message **Background** * Remove (comment out) option to pull references from S3 diff --git a/README.md b/README.md index 021a60bf5526e71780ec5c7e22396c44263a172e..12d16a8e8c47cae9263b2ea36a6d24780db1eca4 100644 --- a/README.md +++ b/README.md @@ -43,7 +43,9 @@ To Run: * **biohpc_max** = process on high power BioHPC cluster nodes (=> 128GB nodes), for resource testing * **aws_ondemand** = AWS Batch on-demand instant requests * **aws_spot** = AWS Batch spot instance requests - * `-email`x email notification on failure + * `--email` email address(es) to send failure notification (comma separated) ***(optional)***: + * e.g: --email 'venkat.malladi@utsouthwestern.edu,Gervaise.Henry@UTSouthwestern.edu' + * NOTES: * once deriva-auth is run and authenticated, the two files above are saved in ```~/.deriva/``` (see official documents from [deriva](https://github.com/informatics-isi-edu/deriva-client#installer-packages-for-windows-and-macosx) on the lifetime of the credentials) * reference version consists of Genome Reference Consortium version, patch release and GENCODE annotation release # (leaving the params blank will use the default version tied to the pipeline version) diff --git a/docs/dag.png b/docs/dag.png old mode 100755 new mode 100644 index 836be2de2281072566a79d1c3f1d74ac11a2aa69..bbc8bffc0fed5b15c7542c8170caacec76a57727 Binary files a/docs/dag.png and b/docs/dag.png differ