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Commit 3add27fa authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove local executor from aws config

parent f9e50ab2
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1 merge request!81Develop
Pipeline #9747 passed with stages
in 29 minutes and 49 seconds
["utsw-bicf/gudmap_rbk.rna-seq","-r","develop","-profile","aws","--deriva","s3://bicf-nf-output/ci-env/auth/credential.json","--bdbag","s3://bicf-nf-output/ci-env/auth/cookies.txt","--repRID","Q-Y5F6","--source","staging","--upload","false","--dev","false","--ci","true","--refSource","datahub","--outDir","s3://bicf-nf-output/ci-env/output/Q-Y5F6_fastqoverride","--fastqsForce","s3://bicf-nf-output/ci-env/input/*.fastq.gz"] ["utsw-bicf/gudmap_rbk.rna-seq","-r","develop","-profile","aws","--deriva","s3://bicf-nf-output/ci-env/auth/credential.json","--bdbag","s3://bicf-nf-output/ci-env/auth/cookies.txt","--repRID","Q-Y5F6","--source","staging","--upload","false","--dev","false","--ci","true","--refSource","datahub","--outDir","s3://bicf-nf-output/ci-env/output/Q-Y5F6_fastqoverride","--fastqsForce","s3://bicf-nf-output/ci-env/input/*.fastq.gz"]
\ No newline at end of file
...@@ -4,12 +4,10 @@ params { ...@@ -4,12 +4,10 @@ params {
process { process {
withName:trackStart { withName:trackStart {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:getBag { withName:getBag {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
...@@ -18,7 +16,6 @@ process { ...@@ -18,7 +16,6 @@ process {
memory = '32 GB' memory = '32 GB'
} }
withName:parseMetadata { withName:parseMetadata {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
...@@ -35,7 +32,6 @@ process { ...@@ -35,7 +32,6 @@ process {
memory = '32 GB' memory = '32 GB'
} }
withName:seqwho { withName:seqwho {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
...@@ -44,7 +40,6 @@ process { ...@@ -44,7 +40,6 @@ process {
memory = '32 GB' memory = '32 GB'
} }
withName:downsampleData { withName:downsampleData {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
...@@ -61,7 +56,6 @@ process { ...@@ -61,7 +56,6 @@ process {
memory = '32 GB' memory = '32 GB'
} }
withName:checkMetadata { withName:checkMetadata {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
...@@ -86,52 +80,42 @@ process { ...@@ -86,52 +80,42 @@ process {
memory = '32 GB' memory = '32 GB'
} }
withName:aggrQC { withName:aggrQC {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:uploadInputBag { withName:uploadInputBag {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:uploadExecutionRun { withName:uploadExecutionRun {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:uploadQC { withName:uploadQC {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:uploadProcessedFile { withName:uploadProcessedFile {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:uploadOutputBag { withName:uploadOutputBag {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:finalizeExecutionRun { withName:finalizeExecutionRun {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:failPreExecutionRun { withName:failPreExecutionRun {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:failExecutionRun { withName:failExecutionRun {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
withName:uploadQC_fail { withName:uploadQC_fail {
executor = 'local'
cpus = 1 cpus = 1
memory = '1 GB' memory = '1 GB'
} }
......
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