diff --git a/docs/nxf_aws-ci-test.json b/docs/nxf_aws-ci-test.json index f802db67c8c35a30f3b87a37a5501b1beb4e704c..bc056da8ded94babdd3b79336c85be4ca1a64d0e 100644 --- a/docs/nxf_aws-ci-test.json +++ b/docs/nxf_aws-ci-test.json @@ -1 +1 @@ -["utsw-bicf/gudmap_rbk.rna-seq","-r","develop","-profile","aws","--deriva","s3://bicf-nf-output/ci-env/auth/credential.json","--bdbag","s3://bicf-nf-output/ci-env/auth/cookies.txt","--repRID","Q-Y5F6","--source","staging","--upload","false","--dev","false","--ci","true","--refSource","datahub","--outDir","s3://bicf-nf-output/ci-env/output/Q-Y5F6_fastqoverride","--fastqsForce","s3://bicf-nf-output/ci-env/input/*.fastq.gz"] +["utsw-bicf/gudmap_rbk.rna-seq","-r","develop","-profile","aws","--deriva","s3://bicf-nf-output/ci-env/auth/credential.json","--bdbag","s3://bicf-nf-output/ci-env/auth/cookies.txt","--repRID","Q-Y5F6","--source","staging","--upload","false","--dev","false","--ci","true","--refSource","datahub","--outDir","s3://bicf-nf-output/ci-env/output/Q-Y5F6_fastqoverride","--fastqsForce","s3://bicf-nf-output/ci-env/input/*.fastq.gz"] \ No newline at end of file diff --git a/nextflowConf/aws.config b/nextflowConf/aws.config index 659e7f21c471f5039c11ea4c23e69c7a7c6829d3..a5133aaab9628885c0bcae79617724020855850c 100644 --- a/nextflowConf/aws.config +++ b/nextflowConf/aws.config @@ -4,12 +4,10 @@ params { process { withName:trackStart { - executor = 'local' cpus = 1 memory = '1 GB' } withName:getBag { - executor = 'local' cpus = 1 memory = '1 GB' } @@ -18,7 +16,6 @@ process { memory = '32 GB' } withName:parseMetadata { - executor = 'local' cpus = 1 memory = '1 GB' } @@ -35,7 +32,6 @@ process { memory = '32 GB' } withName:seqwho { - executor = 'local' cpus = 1 memory = '1 GB' } @@ -44,7 +40,6 @@ process { memory = '32 GB' } withName:downsampleData { - executor = 'local' cpus = 1 memory = '1 GB' } @@ -61,7 +56,6 @@ process { memory = '32 GB' } withName:checkMetadata { - executor = 'local' cpus = 1 memory = '1 GB' } @@ -86,52 +80,42 @@ process { memory = '32 GB' } withName:aggrQC { - executor = 'local' cpus = 1 memory = '1 GB' } withName:uploadInputBag { - executor = 'local' cpus = 1 memory = '1 GB' } withName:uploadExecutionRun { - executor = 'local' cpus = 1 memory = '1 GB' } withName:uploadQC { - executor = 'local' cpus = 1 memory = '1 GB' } withName:uploadProcessedFile { - executor = 'local' cpus = 1 memory = '1 GB' } withName:uploadOutputBag { - executor = 'local' cpus = 1 memory = '1 GB' } withName:finalizeExecutionRun { - executor = 'local' cpus = 1 memory = '1 GB' } withName:failPreExecutionRun { - executor = 'local' cpus = 1 memory = '1 GB' } withName:failExecutionRun { - executor = 'local' cpus = 1 memory = '1 GB' } withName:uploadQC_fail { - executor = 'local' cpus = 1 memory = '1 GB' }