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Commit 37945e09 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add echo to see what's going wrong with mouse_dev ref ci

parent 6a4aed1c
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
Pipeline #8675 canceled with stages
......@@ -483,6 +483,7 @@ mouse_dev:
- GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1)
- GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2)
- GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3)
- echo "echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}'"
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}')
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py --returnParam URL)
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