diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index b8117647b2b05634577e79ca17a18f584a8542ec..2f80d6fc88df4d8fe2b94c8242a606084db4c20d 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -483,6 +483,7 @@ mouse_dev: - GRCv=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f1) - GRCp=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f2) - GENCODE=$(echo ${references} | grep -o ${refName}.* | cut -d '.' -f3) + - echo "echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}'" - query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}') - curl --request GET ${query} > refQuery.json - refURL=$(python ./workflow/scripts/extractRefData.py --returnParam URL)