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Commit 364653c7 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix infer with species error

parent 7c606bac
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2 merge requests!58Develop,!56Resolve "Detect error in inferMetadata for tracking"
Pipeline #8878 passed with stages
in 5 minutes and 46 seconds
...@@ -841,7 +841,7 @@ process inferMetadata { ...@@ -841,7 +841,7 @@ process inferMetadata {
fi fi
fi fi
if [ \${speciesError} ] && [ "${speciesForce}" = "" ] if [ !\${speciesError} ] && [ "${speciesForce}" = "" ]
then then
# infer experimental setting from dedup bam # infer experimental setting from dedup bam
echo -e "LOG: infer experimental setting from dedup bam" >> ${repRID}.inferMetadata.log echo -e "LOG: infer experimental setting from dedup bam" >> ${repRID}.inferMetadata.log
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