From 364653c72d0e5bb3ffce4c38f2d69c12516a9f0f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 7 Jan 2021 17:25:07 -0600
Subject: [PATCH] Fix infer with species error
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index a17b8bc..b86cae6 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -841,7 +841,7 @@ process inferMetadata {
fi
fi
- if [ \${speciesError} ] && [ "${speciesForce}" = "" ]
+ if [ !\${speciesError} ] && [ "${speciesForce}" = "" ]
then
# infer experimental setting from dedup bam
echo -e "LOG: infer experimental setting from dedup bam" >> ${repRID}.inferMetadata.log
--
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