Merge branch '64-metadata.mismatch' into 'develop'
Resolve "Detect error in inferMetadata for tracking" Closes #90, #81, #86, #84, #37, #69, and #64 See merge request !56
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- .gitignore 2 additions, 1 deletion.gitignore
- .gitlab-ci.yml 30 additions, 29 deletions.gitlab-ci.yml
- CHANGELOG.md 13 additions, 0 deletionsCHANGELOG.md
- README.md 20 additions, 12 deletionsREADME.md
- docs/RNA-Seq Pipeline Design Flowchart.drawio 0 additions, 1 deletiondocs/RNA-Seq Pipeline Design Flowchart.drawio
- docs/RNA-Seq Pipeline Design Flowchart.jpg 0 additions, 0 deletionsdocs/RNA-Seq Pipeline Design Flowchart.jpg
- docs/RNA-Seq Pipeline Design Process Table.docx 0 additions, 0 deletionsdocs/RNA-Seq Pipeline Design Process Table.docx
- docs/RNA-Seq Pipeline Design Process Table.pdf 0 additions, 0 deletionsdocs/RNA-Seq Pipeline Design Process Table.pdf
- docs/dag.png 0 additions, 0 deletionsdocs/dag.png
- docs/software_references_mqc.yaml 0 additions, 0 deletionsdocs/software_references_mqc.yaml
- docs/software_versions_mqc.yaml 1 addition, 1 deletiondocs/software_versions_mqc.yaml
- test_data/Replicate_For_Input_Bag(test).json 97 additions, 0 deletionstest_data/Replicate_For_Input_Bag(test).json
- test_data/createTestData.sh 10 additions, 8 deletionstest_data/createTestData.sh
- workflow/conf/Replicate_For_Input_Bag.json 1 addition, 1 deletionworkflow/conf/Replicate_For_Input_Bag.json
- workflow/conf/aws.config 38 additions, 22 deletionsworkflow/conf/aws.config
- workflow/conf/biohpc.config 40 additions, 22 deletionsworkflow/conf/biohpc.config
- workflow/nextflow.config 28 additions, 16 deletionsworkflow/nextflow.config
- workflow/rna-seq.nf 913 additions, 265 deletionsworkflow/rna-seq.nf
- workflow/scripts/bdbag_fetch.sh 18 additions, 7 deletionsworkflow/scripts/bdbag_fetch.sh
- workflow/scripts/parse_meta.py 1 addition, 6 deletionsworkflow/scripts/parse_meta.py
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