Put reference building script into Snippets

https://git.biohpc.swmed.edu/gudmap_rbk/rna-seq/snippets

added To Do documentation support labels

added Doing label and removed To Do label

added To Do label and removed Doing label

can we move this into a nf script.

Then potential DSL-2 improvements to have reference builder and rna-seq combined pipeline.

@s181706 Can you please make these a new standalone nf script in this repository?

changed milestone to %FUTURE Version

changed milestone to %1.0.0

marked this issue as related to #81 (closed)

added Test label and removed To Do label

Add bed creation to snippet

@s181706 reference organization should be below:

• annotation folder with the .gtf and the .bed
• metadata folder with the 2x .tsv's (maybe name the files better)
• sequence folder with the fasta
• hisat2 folder

mentioned in merge request !52 (closed)

mentioned in merge request !56 (merged)

mentioned in commit 30620d90

closed via merge request !56 (merged)