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Commit 1f1c6075 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove edgeR from calculateTPM script

parent 44e21870
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2 merge requests!37v0.0.1,!22Resolve "process_count"
gc()
library(optparse)
library(edgeR)
option_list=list(
make_option("--count",action="store",type='character',help="Count File")
......@@ -29,4 +28,4 @@ tpm <- rpk/scale
output <- cbind(count,tpm)
colnames(output)[7] <- "count"
write.table(output,file=paste0(repRID,".countTable.csv"),sep=",",row.names=FALSE,quote=FALSE)
\ No newline at end of file
write.table(output,file=paste0(repRID,".countTable.csv"),sep=",",row.names=FALSE,quote=FALSE)
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