diff --git a/workflow/scripts/calcuateTPM.R b/workflow/scripts/calcuateTPM.R index 945116510462a1b8777750abb829d537bbccdc47..3643073549a6a9b8de8f1dce1d4a95ead52fa223 100644 --- a/workflow/scripts/calcuateTPM.R +++ b/workflow/scripts/calcuateTPM.R @@ -1,6 +1,5 @@ gc() library(optparse) -library(edgeR) option_list=list( make_option("--count",action="store",type='character',help="Count File") @@ -29,4 +28,4 @@ tpm <- rpk/scale output <- cbind(count,tpm) colnames(output)[7] <- "count" -write.table(output,file=paste0(repRID,".countTable.csv"),sep=",",row.names=FALSE,quote=FALSE) \ No newline at end of file +write.table(output,file=paste0(repRID,".countTable.csv"),sep=",",row.names=FALSE,quote=FALSE)