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Commit 170b0706 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Remove processes from AWS configs

parent 020d5078
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2 merge requests!37v0.0.1,!28Resolve "Move inference to start of pipeline"
Pipeline #6651 passed with stages
in 1 hour and 3 minutes
workDir = 's3://gudmap.rbk/work' workDir = 's3://'
aws.client.storageEncryption = 'AES256' aws.client.storageEncryption = 'AES256'
aws { aws {
region = 'us-east-2' region = 'us-east-2'
...@@ -9,29 +9,7 @@ aws { ...@@ -9,29 +9,7 @@ aws {
process { process {
executor = 'awsbatch' executor = 'awsbatch'
queue = 'highpriority-3278a8b0-1fc8-11ea-b1ac-021e2396e2cc' queue = 'highpriority-'
cpus = 1 cpus = 1
memory = '2 GB' memory = '2 GB'
}
withName:parseMetadata {
cpus = 5
}
withName:getRef {
cpus = 8
}
withName:trimData {
cpus = 8
memory = '2 GB'
}
withName:alignData {
cpus = 50
memory = '5 GB'
}
withName:dedupData {
cpus = 2
memory = '20 GB'
}
withName:fastqc {
memory = '5 GB'
}
}
\ No newline at end of file
workDir = 's3://gudmap.rbk/work' workDir = 's3://'
aws.client.storageEncryption = 'AES256' aws.client.storageEncryption = 'AES256'
aws { aws {
region = 'us-east-2' region = 'us-east-2'
...@@ -9,29 +9,7 @@ aws { ...@@ -9,29 +9,7 @@ aws {
process { process {
executor = 'awsbatch' executor = 'awsbatch'
queue = 'default-3278a8b0-1fc8-11ea-b1ac-021e2396e2cc' queue = 'default-'
cpus = 1 cpus = 1
memory = '2 GB' memory = '2 GB'
withName:parseMetadata {
cpus = 5
}
withName:getRef {
cpus = 8
}
withName:trimData {
cpus = 8
memory = '2 GB'
}
withName:alignData {
cpus = 50
memory = '5 GB'
}
withName:dedupData {
cpus = 2
memory = '20 GB'
}
withName:fastq {
memory = '5 GB'
}
} }
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