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Commit 0dc106d1 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix upload output bag ci unit test

parent ab0e4bb6
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
Pipeline #8468 failed with stages
in 1 minute and 34 seconds
......@@ -288,7 +288,7 @@ uploadInputBag:
script:
- ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
- >
if [ `deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -q '/TEST$'` ]; then
if [ `singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -q '/TEST$'` ]; then
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST
echo /hatrac/resources/rnaseq/pipeline/input_bag/TEST created
else
......@@ -367,7 +367,7 @@ uploadOutputBag:
script:
- ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
- >
if [ `deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/output_bag/ | grep -q '/TEST$'` ]; then
if [ `singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/output_bag/ | grep -q '/TEST$'` ]; then
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/output_bag/TEST
echo /hatrac/resources/rnaseq/pipeline/output_bag/TEST created
else
......
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