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Commit 0d01fd1c authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Display singularity cache

parent e697def7
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2 merge requests!76Develop,!71Seqwho
Pipeline #9380 canceled with stages
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...@@ -31,6 +31,7 @@ stages: ...@@ -31,6 +31,7 @@ stages:
img_cache: img_cache:
stage: singularity stage: singularity
script: script:
- export -p | grep SINGULARITY_CACHEDIR
- > - >
for container in `cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq`; do for container in `cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq`; do
singularity pull 'docker://'${container} singularity pull 'docker://'${container}
......
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