diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 131f5bf0bb62f5862b3565b5cb8199dda8791120..c44e735f1fc0af0f13bf51c6103b02747a139981 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -31,6 +31,7 @@ stages: img_cache: stage: singularity script: + - export -p | grep SINGULARITY_CACHEDIR - > for container in `cat nextflow.config | grep -oP "container = \K.*" | tr -d "'" | sort | uniq`; do singularity pull 'docker://'${container}