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Commit 08fa8dd8 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Finalize CI unit uploadInputBag

parent 56cb3ac1
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2 merge requests!58Develop,!53Resolve "process_derivaUpload"
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.gitlab-ci.yml
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...@@ -288,7 +288,7 @@ uploadInputBag: ...@@ -288,7 +288,7 @@ uploadInputBag:
script: script:
- ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json - ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json
- > - >
hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o '/TEST$'') hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o '/TEST$')
echo && echo &&
if [ -z "${hatrac}" ]; then if [ -z "${hatrac}" ]; then
singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST && singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST &&
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