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  • BICF
  • Merge requests

  • Open 3
  • Merged 343
  • Closed 50
  • All 396
  • Priority Created date Updated date Milestone due date Popularity Label priority Title
  • Updated Zenodo id   0 of 7 tasks completed
    BICF/Astrocyte/cellranger_count!77 · created Aug 15, 2020 by Venkat Malladi   2.2.0   To Do
    • CLOSED
    • 3
    updated Aug 15, 2020
  • Update CHANGELOG.md with new v1.1.0 change information.
    BICF/Astrocyte/sra_pipeline!60 · created Jun 17, 2020 by Jonathan Gesell   Updates
    • CLOSED
    • 0
    updated Jun 17, 2020
  • WIP: Resolve "Add fragment size distribution"
    BICF/Astrocyte/atacseq_analysis!23 · created Jun 02, 2020 by Holly Ruess   Version 2.0   master   enhancment
    • CLOSED
    • 0
    updated Jun 02, 2020
  • Resolve "TSS enrichment score"   0 of 6 tasks completed
    BICF/Astrocyte/atacseq_analysis!21 · created May 28, 2020 by Holly Ruess   Version 2.0   master   enhancment
    • CLOSED
    • 0
    updated May 28, 2020
  • Resolve "Add FRiP score"   0 of 6 tasks completed
    BICF/Astrocyte/atacseq_analysis!19 · created May 13, 2020 by Holly Ruess   Version 2.0   master   enhancment
    • CLOSED
    • 1
    updated May 13, 2020
  • Update main.nf to replace 'singularity exec' with 'singularity run' to avoid...
    BICF/Astrocyte/sra_pipeline!49 · created Feb 06, 2020 by Jonathan Gesell   Singularity 2.0.0 Compatability   Bug fixes
    • CLOSED
    • 0
    updated Feb 06, 2020
  • Develop
    BICF/Astrocyte/cellranger_mkfastq!58 · created Jan 06, 2020 by Gervaise Henry   v2.1.5   master
    • CLOSED
    • 0
    updated Jan 06, 2020
  • WIP: Resolve "Fix Trim Reads"
    BICF/Astrocyte/atacseq_analysis!6 · created Dec 11, 2019 by Holly Ruess   Version 2.0   master   enhancment
    • CLOSED
    • 0
    updated Dec 11, 2019
  • WIP: Resolve "Fix Trim Reads"
    BICF/Astrocyte/atacseq_analysis!5 · created Dec 11, 2019 by Holly Ruess   Version 2.0   master   enhancment
    • CLOSED
    • 0
    updated Dec 11, 2019
  • WIP: Resolve "Fix Trim Reads"
    BICF/Astrocyte/atacseq_analysis!4 · created Dec 11, 2019 by Holly Ruess   Version 2.0   master   enhancment
    • CLOSED
    • 0
    updated Dec 11, 2019
  • WIP: Resolve "Remove unnecessary columns from design file"
    BICF/Astrocyte/atacseq_analysis!1 · created Dec 04, 2019 by Holly Ruess   Version 2.0   master
    • CLOSED
    • 0
    updated Dec 04, 2019
  • Remove publish dirs for intermediate processes
    BICF/Astrocyte/cellranger_mkfastq!55 · created Nov 07, 2019 by Gervaise Henry   v2.1.5   enhancement
    • CLOSED
    • 0
    updated Nov 07, 2019
  • WIP: Resolve "Cancer Gene Table"
    BICF/KCE/kce_etl!2 · created Oct 24, 2019 by Venkat Malladi
    • CLOSED
    • 0
    updated Oct 24, 2019
  • WIP: Aws
    BICF/Astrocyte/sra_pipeline!41 · created Oct 08, 2019 by Jonathan Gesell   AWS Functionality   Updates testing
    • CLOSED
    • 0
    updated Oct 08, 2019
  • Updated to most recent images
    BICF/Astrocyte/sra_pipeline!39 · created Oct 01, 2019 by Jonathan Gesell   Updates
    • CLOSED
    • 0
    updated Oct 01, 2019
  • Resolve "Update to bicfbase:1.1"
    BICF/Astrocyte/sra_pipeline!38 · created Oct 01, 2019 by Jonathan Gesell   Updates
    • CLOSED
    • 0
    updated Oct 01, 2019
  • Update lab_orcids.md
    onboarding!13 · created Sep 19, 2019 by Mingjie Li
    • CLOSED
    • 0
    updated Sep 26, 2019
  • WIP: Resolve "Testing fails on new update"
    BICF/Astrocyte/chipseq_analysis!59 · created Sep 16, 2019 by Venkat Malladi   1.1.1   master   bug
    • CLOSED
    • 0
    updated Sep 16, 2019
  • Remove spaces from design file
    BICF/Astrocyte/cellranger_mkfastq!52 · created Aug 29, 2019 by Jeremy Mathews   v2.1.5   bug confirmed
    • CLOSED
    • 0
    updated Aug 29, 2019
  • Vizapp
    BICF/Astrocyte/cellranger_mkfastq!51 · created Aug 27, 2019 by Jeremy Mathews
    • CLOSED
    • 0
    updated Aug 27, 2019
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