Explore projects

The general gene expression analysis pipeline of 10X Visium data

Program that overlays MEG dipoles onto MRI images and provides region highlighting to show where the dipoles are located.

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app

Files from the Advanced Concepts of Deep Learning Nanocourse

This is a test repo

misc code specific for placenta study

Journal Club for foundational machine learning topics

code for interchangeability by Nancy Obuchowski

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

Generate flow-rate gradients with Fluigent microfluidic pumps.

A Flywheel gear to import MEG metadata from files

R code for subsample correlation analysis as used in Thody et al. 2022.

3 month training notes/walkthrough of excersises

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"