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A vagrant box containing the setup necessary for building singularity images
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BioHPC Singularity tree with non-core patches
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Source codes to perform simulations of microtubule growth. Cleary et al. 2022, Elife, "Measurements and simulations of microtubule growth imply strong longitudinal interactions and reveal a role for GDP on the elongating end".
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Instructions to login into BioHPC and adding SSH key to GitHub profile
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This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.
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This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.
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This is the conversion of the BICF RNASeq pipeline into the nextflow framework.
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This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.
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PySlurm with fixes on the 16.05.5 branch to allow use with Python 3.6+
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