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This is the conversion of the BICF RNASeq pipeline into the nextflow framework.
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This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.
Topics: RNASeq NGSUpdated -
This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.
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BICF / Software / FMAP
OtherFunctional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
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NGS CLIA Lab / process_scripts
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Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data
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BICF / Astrocyte / sra_pipeline
MIT LicenseUpdated -
BICF / Software / TReNCo
MIT LicenseTAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.
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Astrocyte / Workflows / BICF / process_scripts
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The general gene expression analysis pipeline of 10X Visium data
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