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TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

De novo circular RNA detection from circular viral genome

Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.

This is the conversion of the BICF RNASeq pipeline into the nextflow framework.

The general gene expression analysis pipeline of 10X Visium data