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This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application

Journal Club for foundational machine learning topics

BFei's student group project placenta segmentator

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app

Simple Gears to help you start your own development at UT Southwestern

Gearification of Sybil Lung Cancer Risk Prediction (https://github.com/reginabarzilaygroup/Sybil)

An introduction to singularity

BioHPC Singularity tree with non-core patches