Explore projects

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

Phillips replacement

cutandrun pipeline from https://github.com/nf-core/cutandrun

Scan Singularity container images using a Clair server

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

Program that overlays MEG dipoles onto MRI images and provides region highlighting to show where the dipoles are located.

code for interchangeability by Nancy Obuchowski

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.

Analysis scripts for projects related to germ cell tumors.

A list of R packages/libraries required to run pipelines.

Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data

Created by Cooper Mellema in Dr. Montillo's Deep Learning Lab University of Texas Southwestern Medical Center Lyda Hill Dept. of Bioinformatics Project centered around using different causal measures to infer Effective connectivity and DL properties

An example workflow package for the BioHPC Astrocyte workflow engine.

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.