Explore projects

De novo circular RNA detection from circular viral genome

Accession Research Samples into Clarity. Creates a project based on the current month or uses existing month project if it already exists.

basic useful copy-and-paste type codes

This project houses code from the Meeks Lab and TIBIR Whole Brain Microscopy Facility that facilitates image registration and analysis

Quick and dirty singularity bootstrap definitions for all biocontainers.

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

A repository for code to replicate the analysis of single cell data from female human urethra.

Source codes to perform simulations of microtubule growth. Cleary et al. 2022, Elife, "Measurements and simulations of microtubule growth imply strong longitudinal interactions and reveal a role for GDP on the elongating end".

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

Example static site using mkdocs for BioHPC GitLab pages.

Phillips replacement

Scan Singularity container images using a Clair server

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies