Explore projects

Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".

Gearification of Sybil Lung Cancer Risk Prediction (https://github.com/reginabarzilaygroup/Sybil)

Move Flywheel data to box.com

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

AI segmentation for axial T2W MR Autosomal Dominant Polycystic Kidney Disease (https://github.com/aksg87/adpkd-segmentation-pytorch)

Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.

The flash-community FTP project allows users to share their files with guests.

tes

A vagrant box containing the setup necessary for building singularity images

Know-how, trouble-shooting, work log, and memo, etc.

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

This repo is designed to provide a set of scripts that models microbial communities using generalized Lotka-Volterra equations.