Explore projects

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.

R code for subsample correlation analysis as used in Thody et al. 2022.

Gearification of Sybil Lung Cancer Risk Prediction (https://github.com/reginabarzilaygroup/Sybil)

Updates and progress on Nemo

3 month training notes/walkthrough of excersises

DeBias decouples global bias from direct interactions in co-orientation and co-localization data.

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app

AI segmentation for axial T2W MR Autosomal Dominant Polycystic Kidney Disease (https://github.com/aksg87/adpkd-segmentation-pytorch)

Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data