- Feb 23, 2017
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Raquel Bromberg authored
cm.cpp and mctr.h sped up: In mctr, get_aa(...) replaced wtih 2 static arrays, vector .at() calls replaced by [], increment_bits_it0(...) rewritten with get_score(...) function called only once per sequence.
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- Jun 30, 2016
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Raquel Bromberg authored
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- Jun 27, 2016
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Raquel Bromberg authored
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Raquel Bromberg authored
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- Jun 22, 2016
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Raquel Bromberg authored
readme.txt --> README. Deleted commented out code and also code that wasn't necessary for the class's main functions (e.g. all_matches and all_all_matches)
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- Apr 29, 2016
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Raquel Bromberg authored
readme.txt updated. Examples directory modified. Output statements from programs reduced. All programs and files not involved in the core SlopeTree routines removed. Some minor code cleanup.
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- Mar 24, 2016
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Raquel Bromberg authored
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- Mar 23, 2016
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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- Mar 22, 2016
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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- Mar 18, 2016
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Raquel Bromberg authored
Entropy calculation moved to its own program dentrop.cpp. 3 scripts added: dSTM.sh which runs SlopeTree from the info file generation through to the generation of the distance matrix; and dMT.sh and pFilt.sh which provide intermediate files for filtering procedures.
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- Feb 08, 2016
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Raquel Bromberg authored
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- Aug 12, 2015
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David Trudgian authored
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David Trudgian authored
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David Trudgian authored
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David Trudgian authored
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- Aug 11, 2015
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David Trudgian authored
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