- 23 Feb, 2017 1 commit
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Raquel Bromberg authored
cm.cpp and mctr.h sped up: In mctr, get_aa(...) replaced wtih 2 static arrays, vector .at() calls replaced by [], increment_bits_it0(...) rewritten with get_score(...) function called only once per sequence.
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- 30 Jun, 2016 1 commit
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Raquel Bromberg authored
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- 27 Jun, 2016 2 commits
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Raquel Bromberg authored
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Raquel Bromberg authored
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- 22 Jun, 2016 1 commit
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Raquel Bromberg authored
readme.txt --> README. Deleted commented out code and also code that wasn't necessary for the class's main functions (e.g. all_matches and all_all_matches)
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- 29 Apr, 2016 1 commit
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Raquel Bromberg authored
readme.txt updated. Examples directory modified. Output statements from programs reduced. All programs and files not involved in the core SlopeTree routines removed. Some minor code cleanup.
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- 24 Mar, 2016 1 commit
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Raquel Bromberg authored
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- 23 Mar, 2016 7 commits
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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- 22 Mar, 2016 3 commits
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Raquel Bromberg authored
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Raquel Bromberg authored
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Raquel Bromberg authored
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- 18 Mar, 2016 1 commit
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Raquel Bromberg authored
Entropy calculation moved to its own program dentrop.cpp. 3 scripts added: dSTM.sh which runs SlopeTree from the info file generation through to the generation of the distance matrix; and dMT.sh and pFilt.sh which provide intermediate files for filtering procedures.
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- 08 Feb, 2016 1 commit
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Raquel Bromberg authored
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- 12 Aug, 2015 4 commits
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David Trudgian authored
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David Trudgian authored
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David Trudgian authored
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David Trudgian authored
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- 11 Aug, 2015 1 commit
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David Trudgian authored
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