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closed issue #6 "Handle multiple samples correctly" at Astrocyte / Workflows / Strand Lab / scRNA-QC
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commented on issue#6 "Handle multiple samples correctly" at Astrocyte / Workflows / Strand Lab / scRNA-QC

Parameter for batch correction added. Tested on Astrocyte with one or multiple samples; tests were successful.

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closed issue #8 "Clarify outputs in docs" at Astrocyte / Workflows / Strand Lab / scRNA-QC
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commented on issue#8 "Clarify outputs in docs" at Astrocyte / Workflows / Strand Lab / scRNA-QC

Added more details about how to interpret data in the docs.

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  • cc5511b8 · Add interpretation recommendations
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closed issue #9 "Add marker gene detection" at Astrocyte / Workflows / Strand Lab / scRNA-QC
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commented on issue#9 "Add marker gene detection" at Astrocyte / Workflows / Strand Lab / scRNA-QC

Docs updated; complete

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John Lafin's avatar
John Lafin's avatar
closed issue #2 "Update nextflow workflow" at Astrocyte / Workflows / Strand Lab / scRNA-QC
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commented on issue#2 "Update nextflow workflow" at Astrocyte / Workflows / Strand Lab / scRNA-QC

Workflow is functional and deployed

John Lafin's avatar
commented on issue#9 "Add marker gene detection" at Astrocyte / Workflows / Strand Lab / scRNA-QC

Added marker gene detection and tested. Still need to update docs

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John Lafin's avatar
  • f5de950b · Include markers in process output
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