Commits · 763931b82fad005837eb5cbf81d00d9961339c1b · Astrocyte / Workflows / BICF / chipseq_analysis

Nov 19, 2017
- Remove extra sort from rescaling causing issues. · 763931b8
  Venkat Malladi authored 7 years ago
  
  763931b8
Nov 18, 2017
- Removed hard coded file path when testing. · 9ca5c5ff
  Venkat Malladi authored 7 years ago
  
  9ca5c5ff
Nov 17, 2017
- Fix test for python style. · 49b82cd2
  Venkat Malladi authored 7 years ago
  
  49b82cd2
- Add test for checking overlap of peaks. · 717df916
  Venkat Malladi authored 7 years ago
  
  717df916
- Add in test peak calling step. · 83ca8c09
  Venkat Malladi authored 7 years ago
  
  83ca8c09
- Fix the python erros. · 977b3a31
  Venkat Malladi authored 7 years ago
  
  977b3a31
- Fix errors in overlap peaks and design generation. · 225c1fd0
  Venkat Malladi authored 7 years ago
  
  225c1fd0
- Fix variable idenfitication of preDiffDesign. · 163c967f
  Venkat Malladi authored 7 years ago
  
  163c967f
- Remove temp narrowPeak files. · 9a6d319d
  Venkat Malladi authored 7 years ago
  
  9a6d319d
- Fix p-value signal names. · 42c15d75
  Venkat Malladi authored 7 years ago
  
  42c15d75
- Fix typo of alias of scor function. · 4da6aee0
  Venkat Malladi authored 7 years ago
  
  4da6aee0
Nov 16, 2017
- Flatten splitCSV to fix output erro. · ac13c6cc
  Venkat Malladi authored 7 years ago
  
  ac13c6cc
- Fix mapping of values. · 01c21d3c
  Venkat Malladi authored 7 years ago
  
  01c21d3c
- Fix config file. · 088309a4
  Venkat Malladi authored 7 years ago
  
  088309a4
- Fix channels. · 8ebef170
  Venkat Malladi authored 7 years ago
  
  8ebef170
- Fix channels. · dcb430e3
  Venkat Malladi authored 7 years ago
  
  dcb430e3
- Fix name. · c080299f
  Venkat Malladi authored 7 years ago
  
  c080299f
- Fix peak outputs. · 226a5924
  Venkat Malladi authored 7 years ago
  
  226a5924
- Add in naive overlap peaks. · a2609dc8
  Venkat Malladi authored 7 years ago
  
  a2609dc8
Nov 15, 2017
- Fix naming schema of xcor. · 0ee7bca0
  Venkat Malladi authored 7 years ago
  
  0ee7bca0
- Changed to bedSort. · bbeb4524
  Venkat Malladi authored 7 years ago
  
  bbeb4524
- Fix syntax. · 45277ef8
  Venkat Malladi authored 7 years ago
  
  45277ef8
- Change to local executor. · 0d5907c2
  Venkat Malladi authored 7 years ago
  
  0d5907c2
- Add in basename to name the process. · 9864c55e
  Venkat Malladi authored 7 years ago
  
  9864c55e
Nov 14, 2017
- Fix name of process. · 822181c3
  Venkat Malladi authored 7 years ago
  
  822181c3
- Add in call peaks step and configurations. · 96e6d832
  Venkat Malladi authored 7 years ago
  
  96e6d832
- Fix parsing of fraglength. · bb44fc95
  Venkat Malladi authored 7 years ago
  
  bb44fc95
- Fixed missing libraries and update syntax for python3. · 8c7736d9
  Venkat Malladi authored 7 years ago
  
  8c7736d9
- Fix xcor to be calucated and updated the pseudoreplicate names. · 38d866fe
  Venkat Malladi authored 7 years ago
  
  38d866fe
- Adding in basics for calling peaks with macs2. · 892d2c1b
  Venkat Malladi authored 7 years ago
  
  892d2c1b
- Fix psuedo replicate calling. · 52095af0
  Venkat Malladi authored 7 years ago
  
  52095af0
Nov 10, 2017
- Fix single replicate assiging. · d5243c8b
  Venkat Malladi authored 7 years ago
  
  d5243c8b
Oct 31, 2017
- Update where flatten takes place. · f76eea70
  Venkat Malladi authored 7 years ago
  
  f76eea70
- Fix list of files. · f4acf072
  Venkat Malladi authored 7 years ago
  
  f4acf072
Oct 30, 2017
- Merge branch '13-poolandpseudo' into 'master' · 55474b3b
  Venkat Malladi authored 7 years ago
```
Resolve "Pool and Pseudoreplication"

Closes #13

See merge request !12
```
  55474b3b
- Add missing library os. · 0b1e6326
  Venkat Malladi authored 7 years ago
  
  0b1e6326
- Fix double if statement. · f78b3a80
  Venkat Malladi authored 7 years ago
  
  f78b3a80
- Fix string and comparing of values. · c0e0b003
  Venkat Malladi authored 7 years ago
  
  c0e0b003
- Fix refernece to cutoff value in nextflow process. · 6839e190
  Venkat Malladi authored 7 years ago
  
  6839e190
- Fix file reference. · 96c119ec
  Venkat Malladi authored 7 years ago
  
  96c119ec