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Commit 38d866fe authored by Venkat Malladi's avatar Venkat Malladi
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Fix xcor to be calucated and updated the pseudoreplicate names.

parent 892d2c1b
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......@@ -190,17 +190,20 @@ def main():
replicate = design_df.at[0, 'replicate']
design_new_df = design_df.loc[np.repeat(design_df.index, 4)].reset_index()
design_new_df['replicate'] = design_new_df['replicate'].astype(str)
design_new_df.at[1, 'sample_id'] = experiment_id + '_pr'
design_new_df.at[1, 'sample_id'] = experiment_id + '_pr1'
design_new_df.at[1, 'replicate'] = '1_pr'
design_new_df.at[2, 'sample_id'] = experiment_id + '_pr'
design_new_df.at[1,'xcor'] = 'Calculate'
design_new_df.at[2, 'sample_id'] = experiment_id + '_pr2'
design_new_df.at[2, 'replicate'] = '2_pr'
design_new_df.at[3, 'sample_id'] = experiment_id + '_pr'
design_new_df.at[2,'xcor'] = 'Calculate'
design_new_df.at[3, 'sample_id'] = experiment_id + 'pooled'
design_new_df.at[3, 'replicate'] = 'pooled'
design_new_df.at[3,'xcor'] = 'Calculate'
# Make 2 self psuedoreplicates
self_pseudoreplicates_dict = {}
for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
replicate_prefix = experiment_id + '_' + rep
replicate_prefix = experiment_id + '_' + str(rep)
self_pseudoreplicates_dict = \
self_psuedoreplication(tag_file, replicate_prefix, paired)
......
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