Commits · 45277ef8ea8cf3dfa10ed436f6414a4128c13b05 · Astrocyte / Workflows / BICF / chipseq_analysis

Nov 15, 2017
- Fix syntax. · 45277ef8
  Venkat Malladi authored 7 years ago
  
  45277ef8
- Change to local executor. · 0d5907c2
  Venkat Malladi authored 7 years ago
  
  0d5907c2
- Add in basename to name the process. · 9864c55e
  Venkat Malladi authored 7 years ago
  
  9864c55e
Nov 14, 2017
- Fix name of process. · 822181c3
  Venkat Malladi authored 7 years ago
  
  822181c3
- Add in call peaks step and configurations. · 96e6d832
  Venkat Malladi authored 7 years ago
  
  96e6d832
- Fix parsing of fraglength. · bb44fc95
  Venkat Malladi authored 7 years ago
  
  bb44fc95
- Fixed missing libraries and update syntax for python3. · 8c7736d9
  Venkat Malladi authored 7 years ago
  
  8c7736d9
- Fix xcor to be calucated and updated the pseudoreplicate names. · 38d866fe
  Venkat Malladi authored 7 years ago
  
  38d866fe
- Adding in basics for calling peaks with macs2. · 892d2c1b
  Venkat Malladi authored 7 years ago
  
  892d2c1b
- Fix psuedo replicate calling. · 52095af0
  Venkat Malladi authored 7 years ago
  
  52095af0
Nov 10, 2017
- Fix single replicate assiging. · d5243c8b
  Venkat Malladi authored 7 years ago
  
  d5243c8b
Oct 31, 2017
- Update where flatten takes place. · f76eea70
  Venkat Malladi authored 7 years ago
  
  f76eea70
- Fix list of files. · f4acf072
  Venkat Malladi authored 7 years ago
  
  f4acf072
Oct 30, 2017
- Merge branch '13-poolandpseudo' into 'master' · 55474b3b
  Venkat Malladi authored 7 years ago
```
Resolve "Pool and Pseudoreplication"

Closes #13

See merge request !12
```
  55474b3b
- Add missing library os. · 0b1e6326
  Venkat Malladi authored 7 years ago
  
  0b1e6326
- Fix double if statement. · f78b3a80
  Venkat Malladi authored 7 years ago
  
  f78b3a80
- Fix string and comparing of values. · c0e0b003
  Venkat Malladi authored 7 years ago
  
  c0e0b003
- Fix refernece to cutoff value in nextflow process. · 6839e190
  Venkat Malladi authored 7 years ago
  
  6839e190
- Fix file reference. · 96c119ec
  Venkat Malladi authored 7 years ago
  
  96c119ec
Oct 29, 2017
- Fix string of index. · 0a9794c2
  Venkat Malladi authored 7 years ago
  
  0a9794c2
- Fix index as string references. · bf27b99b
  Venkat Malladi authored 7 years ago
  
  bf27b99b
Oct 28, 2017
- Fix typo in addig in experimentId. · a3c35282
  Venkat Malladi authored 7 years ago
  
  a3c35282
Oct 27, 2017
- Remove last reps mention. · 544bce42
  Venkat Malladi authored 7 years ago
  
  544bce42
- Fix syntax issues and libaries. · 477530aa
  Venkat Malladi authored 7 years ago
  
  477530aa
- Fix pseudoreplication to be only 2 replicates. · ae9e6c75
  Venkat Malladi authored 7 years ago
  
  ae9e6c75
- Fix passing of experiment id. · 3ba985c6
  Venkat Malladi authored 7 years ago
  
  3ba985c6
- Make process not local. · 3b05c7c2
  Venkat Malladi authored 7 years ago
  
  3b05c7c2
- Fix syntax. · 6f938782
  Venkat Malladi authored 7 years ago
  
  6f938782
- Add in pooling and psuedoreplicate scripts and tests. · 32e90024
  Venkat Malladi authored 7 years ago
  
  32e90024
Oct 26, 2017
- Refactor code to have consistent use of arguments and referenceing pandas. · 249284b7
  Venkat Malladi authored 7 years ago
  
  249284b7
Oct 25, 2017
- Fix syntax of get_args across all scripts. · 648dc44d
  Venkat Malladi authored 7 years ago
  
  648dc44d
- Add in os library. · 93ddd8a2
  Venkat Malladi authored 7 years ago
  
  93ddd8a2
- Fix typ in file. · 87996cff
  Venkat Malladi authored 7 years ago
  
  87996cff
- Add in making experiment design files. · 3d6faead
  Venkat Malladi authored 7 years ago
  
  3d6faead
Oct 24, 2017
- Merge branch '5-phantompeakcalls' into 'master' · 17b7de97
  Venkat Malladi authored 7 years ago
```
Resolve "Include Phantompeakqualtools step"

Closes #5

See merge request !11
```
  17b7de97
- Fix test fil.e · 48fa7dbb
  Venkat Malladi authored 7 years ago
  
  48fa7dbb
- Update test with correct comparison syntax. · 9c6f11a1
  Venkat Malladi authored 7 years ago
  
  9c6f11a1
- Fix output. · 79526d57
  Venkat Malladi authored 7 years ago
  
  79526d57
- Fix options. · f545947d
  Venkat Malladi authored 7 years ago
  
  f545947d
- Fix reference to file. · 6bc954e9
  Venkat Malladi authored 7 years ago
  
  6bc954e9