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Commit b5d2122c authored by Venkat Malladi's avatar Venkat Malladi
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Update modules.

parent ad1a4aa5
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...@@ -9,7 +9,7 @@ params.singleEnd = false ...@@ -9,7 +9,7 @@ params.singleEnd = false
Channel Channel
.fromFilePairs( params.reads, size: params.singleEnd ? 1 : 2 ) .fromFilePairs( params.reads, size: params.singleEnd ? 1 : 2 )
.ifEmpty { error "Cannot find any reads matching: ${params.reads}\nIf this is single-end data, please specify."" } .ifEmpty { error "Cannot find any reads matching: ${params.reads}\nIf this is single-end data, please specify."}
.set { read_pairs } .set { read_pairs }
process qc_fastq { process qc_fastq {
...@@ -26,6 +26,7 @@ process qc_fastq { ...@@ -26,6 +26,7 @@ process qc_fastq {
script: script:
""" """
module load python/3.6.1-2-anaconda
module load fastqc/0.11.5 module load fastqc/0.11.5
$baseDir/scripts/qc_fastq.py -f $reads $baseDir/scripts/qc_fastq.py -f $reads
""" """
......
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