From b5d2122c606ae152a4c3af88c2336468f586b37b Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 12 Sep 2017 15:56:30 -0500
Subject: [PATCH] Update modules.
---
workflow/main.nf | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index b28c8e4..8bf377a 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -9,7 +9,7 @@ params.singleEnd = false
Channel
.fromFilePairs( params.reads, size: params.singleEnd ? 1 : 2 )
- .ifEmpty { error "Cannot find any reads matching: ${params.reads}\nIf this is single-end data, please specify."" }
+ .ifEmpty { error "Cannot find any reads matching: ${params.reads}\nIf this is single-end data, please specify."}
.set { read_pairs }
process qc_fastq {
@@ -26,6 +26,7 @@ process qc_fastq {
script:
"""
+ module load python/3.6.1-2-anaconda
module load fastqc/0.11.5
$baseDir/scripts/qc_fastq.py -f $reads
"""
--
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