diff --git a/workflow/main.nf b/workflow/main.nf index b28c8e4a280841754af798e245dad411dd7c1c05..8bf377addb1a496e148da75e0dae27748e88f8ae 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -9,7 +9,7 @@ params.singleEnd = false Channel .fromFilePairs( params.reads, size: params.singleEnd ? 1 : 2 ) - .ifEmpty { error "Cannot find any reads matching: ${params.reads}\nIf this is single-end data, please specify."" } + .ifEmpty { error "Cannot find any reads matching: ${params.reads}\nIf this is single-end data, please specify."} .set { read_pairs } process qc_fastq { @@ -26,6 +26,7 @@ process qc_fastq { script: """ + module load python/3.6.1-2-anaconda module load fastqc/0.11.5 $baseDir/scripts/qc_fastq.py -f $reads """