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Commit 96069f62 authored by Venkat Malladi's avatar Venkat Malladi
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Update configuration.

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...@@ -14,19 +14,19 @@ process { ...@@ -14,19 +14,19 @@ process {
} }
withName: alignReads{ withName: alignReads{
module = ['python/3.6.1-2-anaconda', 'bwa/intel/0.7.12', 'samtools/1.6'] module = ['python/3.6.1-2-anaconda', 'bwa/intel/0.7.12', 'samtools/1.6']
cpus = 32 queue = '128GB,256GB,256GBv1'
} }
withName: filterReads{ withName: filterReads{
module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'sambamba/0.6.6', 'bedtools/2.26.0'] module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'sambamba/0.6.6', 'bedtools/2.26.0']
cpus = 32 queue = '128GB,256GB,256GBv1'
} }
withName: experimentQC { withName: experimentQC {
module = ['python/3.6.1-2-anaconda', 'deeptools/2.5.0.1'] module = ['python/3.6.1-2-anaconda', 'deeptools/2.5.0.1']
cpus = 32 queue = '128GB,256GB,256GBv1'
} }
withName: convertReads { withName: convertReads {
module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'bedtools/2.26.0'] module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'bedtools/2.26.0']
cpus = 32 queue = '128GB,256GB,256GBv1'
} }
withName: crossReads { withName: crossReads {
module = ['python/3.6.1-2-anaconda', 'phantompeakqualtools/1.2'] module = ['python/3.6.1-2-anaconda', 'phantompeakqualtools/1.2']
...@@ -42,7 +42,7 @@ process { ...@@ -42,7 +42,7 @@ process {
} }
withName: callPeaksMACS { withName: callPeaksMACS {
module = ['python/3.6.1-2-anaconda', 'macs/2.1.0-20151222', 'phantompeakqualtools/1.2', 'UCSC_userApps/v317', 'bedtools/2.26.0'] module = ['python/3.6.1-2-anaconda', 'macs/2.1.0-20151222', 'phantompeakqualtools/1.2', 'UCSC_userApps/v317', 'bedtools/2.26.0']
cpus = 32 queue = '128GB,256GB,256GBv1'
} }
withName: consensusPeaks { withName: consensusPeaks {
module = ['python/3.6.1-2-anaconda', 'bedtools/2.26.0'] module = ['python/3.6.1-2-anaconda', 'bedtools/2.26.0']
......
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