From 96069f62a6902e0d25d5cfbe90666309192c727a Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Wed, 9 Jan 2019 11:47:58 -0600
Subject: [PATCH] Update configuration.
---
workflow/conf/biohpc.config | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 73bffa1..2c0f1c3 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -14,19 +14,19 @@ process {
}
withName: alignReads{
module = ['python/3.6.1-2-anaconda', 'bwa/intel/0.7.12', 'samtools/1.6']
- cpus = 32
+ queue = '128GB,256GB,256GBv1'
}
withName: filterReads{
module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'sambamba/0.6.6', 'bedtools/2.26.0']
- cpus = 32
+ queue = '128GB,256GB,256GBv1'
}
withName: experimentQC {
module = ['python/3.6.1-2-anaconda', 'deeptools/2.5.0.1']
- cpus = 32
+ queue = '128GB,256GB,256GBv1'
}
withName: convertReads {
module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'bedtools/2.26.0']
- cpus = 32
+ queue = '128GB,256GB,256GBv1'
}
withName: crossReads {
module = ['python/3.6.1-2-anaconda', 'phantompeakqualtools/1.2']
@@ -42,7 +42,7 @@ process {
}
withName: callPeaksMACS {
module = ['python/3.6.1-2-anaconda', 'macs/2.1.0-20151222', 'phantompeakqualtools/1.2', 'UCSC_userApps/v317', 'bedtools/2.26.0']
- cpus = 32
+ queue = '128GB,256GB,256GBv1'
}
withName: consensusPeaks {
module = ['python/3.6.1-2-anaconda', 'bedtools/2.26.0']
--
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