Add nextflow containers

nextflow/21.04.1/Dockerfile

+FROM alpine:3.16
+
+LABEL CONTAINER_VERSION="0.0.1" \
+    AUTHOR="Peng Lian" \
+    EMAIL="biohpc-help@utsouthwestern.edu"
+
+# build-time varialbes
+ARG http_proxy="http://proxy.swmed.edu:3128/"
+ARG https_proxy="http://proxy.swmed.edu:3128/"
+ARG no_proxy="*.swmed.edu,*.swmed.org,*.utsouthwestern.edu,localhost,127.0.0.1/8"
+
+ENV http_proxy="${http_proxy}"
+ENV https_proxy="${https_proxy}"
+ENV no_proxy="${no_proxy}"
+ENV NEXTFLOW_VERSION="21.04.1"
+ENV NXF_HOME="/tmp/nextflow"
+
+# update base image
+RUN mkdir /apps /home1 /home2 /work /project /archive /cm /programs && \
+    apk update && \
+    apk add --no-cache \
+        bash \
+        procps \
+        openjdk11 \
+        wget
+
+# install nextflow
+RUN mkdir -p /.nextflow/src && \
+    wget -O /.nextflow/src/nextflow-${NEXTFLOW_VERSION}-all https://github.com/nextflow-io/nextflow/releases/download/v${NEXTFLOW_VERSION}/nextflow-${NEXTFLOW_VERSION}-all && \
+    chmod 755 /.nextflow/src/nextflow-${NEXTFLOW_VERSION}-all && \
+    ln -s /.nextflow/src/nextflow-${NEXTFLOW_VERSION}-all /usr/local/bin/nextflow && \
+    nextflow info
+
+ENTRYPOINT ["/usr/local/bin/nextflow"]

nextflow/22.04.5/Dockerfile

+FROM alpine:3.16
+
+LABEL CONTAINER_VERSION="0.0.1" \
+    AUTHOR="Peng Lian" \
+    EMAIL="biohpc-help@utsouthwestern.edu"
+
+# build-time varialbes
+ARG http_proxy="http://proxy.swmed.edu:3128/"
+ARG https_proxy="http://proxy.swmed.edu:3128/"
+ARG no_proxy="*.swmed.edu,*.swmed.org,*.utsouthwestern.edu,localhost,127.0.0.1/8"
+
+ENV http_proxy="${http_proxy}"
+ENV https_proxy="${https_proxy}"
+ENV no_proxy="${no_proxy}"
+ENV NEXTFLOW_VERSION="22.04.5"
+ENV NXF_HOME="/tmp/nextflow"
+
+# update base image
+RUN mkdir /apps /home1 /home2 /work /project /archive /cm /programs && \
+    apk update && \
+    apk add --no-cache \
+        bash \
+        procps \
+        openjdk11 \
+        wget
+
+# install nextflow
+RUN mkdir -p /.nextflow/src && \
+    wget -O /.nextflow/src/nextflow-${NEXTFLOW_VERSION}-all https://github.com/nextflow-io/nextflow/releases/download/v${NEXTFLOW_VERSION}/nextflow-${NEXTFLOW_VERSION}-all && \
+    chmod 755 /.nextflow/src/nextflow-${NEXTFLOW_VERSION}-all && \
+    ln -s /.nextflow/src/nextflow-${NEXTFLOW_VERSION}-all /usr/local/bin/nextflow && \
+    nextflow info
+
+ENTRYPOINT ["/usr/local/bin/nextflow"]

nextflow/build_and_push.sh

+#!/bin/bash
+
+PACKAGE="nextflow"
+VERSION="22.04.5"
+CONTAINER_TAG="${PACKAGE}:${VERSION}"
+CONTAINER_NAME="git.biohpc.swmed.edu:5050/biohpc/astrocyte-container-images/${CONTAINER_TAG}"
+
+DOCKER_USERNAME="docker-push"
+DOCKER_PASSWORD="AA4KRFCeEg8XSmwyoaAN"
+
+export DOCKER_BUILDKIT=0
+export COMPOSE_DOCKER_CLI_BUILD=0
+
+# build with proxy settings
+docker build \
+	-f ./${VERSION}/Dockerfile \
+        -t ${CONTAINER_TAG} \
+	./${VERSION}
+
+# Tag and push
+docker tag ${CONTAINER_TAG} ${CONTAINER_NAME}
+docker login git.biohpc.swmed.edu:5050 -u ${DOCKER_USERNAME} -p ${DOCKER_PASSWORD}
+docker push ${CONTAINER_NAME}