Add Singularity container

singularity/3.5.3/Dockerfile

+FROM golang:1.13.15-alpine3.12
+
+LABEL CONTAINER_VERSION="0.0.1" \
+    AUTHOR="Peng Lian" \
+    EMAIL="biohpc-help@utsouthwestern.edu"
+
+# build-time varialbes
+ARG http_proxy="http://proxy.swmed.edu:3128/"
+ARG https_proxy="http://proxy.swmed.edu:3128/"
+ARG no_proxy="*.swmed.edu,*.swmed.org,*.utsouthwestern.edu,localhost,127.0.0.1/8"
+
+ENV http_proxy="${http_proxy}" \
+    https_proxy="${https_proxy}" \
+    no_proxy="${no_proxy}" \
+    SINGULARITY_VERSION="3.5.3"
+
+# alpine image with the go tools
+
+RUN apk update && \
+    apk add --virtual automake build-base linux-headers libffi-dev
+RUN apk add --no-cache bash \
+        git \
+        openssh \
+        gcc \
+        squashfs-tools \
+        sudo \
+        libtool \
+        gawk \
+        cryptsetup \
+        linux-headers \
+        build-base \
+        openssl-dev \
+        util-linux \
+        util-linux-dev \
+        shadow-uidmap
+
+RUN mkdir -p /usr/local/var/singularity/mnt && \
+    mkdir -p $GOPATH/src/github.com/sylabs && \
+    cd $GOPATH/src/github.com/sylabs && \
+    git clone https://github.com/sylabs/singularity.git && \
+    cd singularity && \
+    git checkout v${SINGULARITY_VERSION} && \
+    ./mconfig -p /usr/local && \
+    make -C builddir && \
+    make -C builddir install
+
+RUN apk del automake libtool m4 autoconf alpine-sdk linux-headers
+
+ENTRYPOINT ["/usr/local/bin/singularity"]

singularity/3.9.8/Dockerfile

+FROM golang:1.17.12-alpine3.16
+
+LABEL CONTAINER_VERSION="0.0.1" \
+    AUTHOR="Peng Lian" \
+    EMAIL="biohpc-help@utsouthwestern.edu"
+
+# build-time varialbes
+ARG http_proxy="http://proxy.swmed.edu:3128/"
+ARG https_proxy="http://proxy.swmed.edu:3128/"
+ARG no_proxy="*.swmed.edu,*.swmed.org,*.utsouthwestern.edu,localhost,127.0.0.1/8"
+
+ENV http_proxy="${http_proxy}" 
+ENV https_proxy="${https_proxy}" 
+ENV no_proxy="${no_proxy}" 
+ENV SINGULARITY_VERSION="3.9.8"
+
+# alpine image with the go tools
+
+RUN apk update && \
+    apk add --virtual automake build-base linux-headers libffi-dev
+RUN apk add --no-cache bash \
+        git \
+        openssh \
+        gcc \
+        squashfs-tools \
+        sudo \
+        libtool \
+        gawk \
+        cryptsetup \
+        linux-headers \
+        build-base \
+        openssl-dev \
+        util-linux \
+        util-linux-dev \
+        shadow-uidmap
+
+RUN mkdir -p /usr/local/var/singularity/mnt && \
+    mkdir -p $GOPATH/src/github.com/sylabs && \
+    cd $GOPATH/src/github.com/sylabs && \
+    git clone https://github.com/sylabs/singularity.git && \
+    cd singularity && \
+    git checkout v${SINGULARITY_VERSION} && \
+    ./mconfig --without-suid -p /usr/local && \
+    export http_proxy="http://proxy.swmed.edu:3128/" && \
+    export https_proxy="http://proxy.swmed.edu:3128/" && \
+    make -C builddir && \
+    sudo make -C builddir install
+
+RUN apk del automake libtool m4 autoconf alpine-sdk linux-headers
+
+ENTRYPOINT ["/usr/local/bin/singularity"]

singularity/build_and_push.sh

+#!/bin/bash
+
+PACKAGE="singularity"
+VERSION="3.9.8"
+CONTAINER_TAG="${PACKAGE}:${VERSION}"
+CONTAINER_NAME="git.biohpc.swmed.edu:5050/biohpc/astrocyte-container-images/${CONTAINER_TAG}"
+
+DOCKER_USERNAME="docker-push"
+DOCKER_PASSWORD="AA4KRFCeEg8XSmwyoaAN"
+
+export DOCKER_BUILDKIT=0
+export COMPOSE_DOCKER_CLI_BUILD=0
+
+# build with proxy settings
+docker build \
+	-f ./${VERSION}/Dockerfile \
+        -t ${CONTAINER_TAG} \
+	./${VERSION}
+
+# Tag and push
+docker tag ${CONTAINER_TAG} ${CONTAINER_NAME}
+docker login git.biohpc.swmed.edu:5050 -u ${DOCKER_USERNAME} -p ${DOCKER_PASSWORD}
+docker push ${CONTAINER_NAME}