09052024

V2.1/run_analysis.sh

 #!/bin/bash
 module load singularity/3.9.9
 ODA_DIR=$1
-ODA_MODULE=	$ODA_DIR/r_w_packages_4.3.2.sif	#Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif
+ODA_MODULE=$ODA_DIR/r_w_packages_4.3.2.sif	#Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif
 INPUT_FILE=$2
 OUTPUT_FOLDER=$3
+echo $ODA_MODULE
 singularity exec $ODA_MODULE Rscript $ODA_DIR/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a $OUTPUT_FOLDER/ODA_run.log