diff --git a/V2.1/run_analysis.sh b/V2.1/run_analysis.sh index c2b3bec6ccfe1046d97efa0c2ec5502df42b7f38..06b529cbe9d65373d7da876090f17bf28da7bfda 100644 --- a/V2.1/run_analysis.sh +++ b/V2.1/run_analysis.sh @@ -1,8 +1,9 @@ #!/bin/bash module load singularity/3.9.9 ODA_DIR=$1 -ODA_MODULE= $ODA_DIR/r_w_packages_4.3.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif +ODA_MODULE=$ODA_DIR/r_w_packages_4.3.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif INPUT_FILE=$2 OUTPUT_FOLDER=$3 +echo $ODA_MODULE singularity exec $ODA_MODULE Rscript $ODA_DIR/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a $OUTPUT_FOLDER/ODA_run.log