From f1cb42934f2c5d53eb5c6fd1ac6f769d92d0b819 Mon Sep 17 00:00:00 2001 From: Zhiyu <zhiyu.zhao@utsouthwestern.edu> Date: Thu, 5 Sep 2024 21:37:41 -0500 Subject: [PATCH] 09052024 --- V2.1/run_analysis.sh | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/V2.1/run_analysis.sh b/V2.1/run_analysis.sh index c2b3bec..06b529c 100644 --- a/V2.1/run_analysis.sh +++ b/V2.1/run_analysis.sh @@ -1,8 +1,9 @@ #!/bin/bash module load singularity/3.9.9 ODA_DIR=$1 -ODA_MODULE= $ODA_DIR/r_w_packages_4.3.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif +ODA_MODULE=$ODA_DIR/r_w_packages_4.3.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif INPUT_FILE=$2 OUTPUT_FOLDER=$3 +echo $ODA_MODULE singularity exec $ODA_MODULE Rscript $ODA_DIR/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a $OUTPUT_FOLDER/ODA_run.log -- GitLab