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Commit 266e1cb4 authored by Zhiyu Zhao's avatar Zhiyu Zhao
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/archive/CRI/shared/Singularity/zzy/r_with_packages_4.3.2.sif
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/archive/CRI/shared/Singularity/zzy/r4.4.2_with_packages0.2.sif
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#!/bin/bash #!/bin/bash
module load singularity/3.9.9 #Change this to your own command if required for running singularity on your computer. module load singularity/3.9.9 #Change this to your own command if required for running singularity on your computer.
ODA_DIR=$1 ODA_DIR=$1
ODA_MODULE=$ODA_DIR/r_with_packages_4.3.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif ODA_MODULE=$ODA_DIR/r4.4.2_with_packages0.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r4.4.2_with_packages0.1.sif
INPUT_FILE=$2 INPUT_FILE=$2
OUTPUT_FOLDER=$3 OUTPUT_FOLDER=$3
echo $ODA_MODULE echo $ODA_MODULE
#singularity exec $ODA_MODULE Rscript /ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for a released version. #singularity exec $ODA_MODULE Rscript /ODA_V2.2.2/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for a released version.
singularity exec $ODA_MODULE Rscript $1/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for debugging. singularity exec $ODA_MODULE Rscript $1/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for debugging.
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