diff --git a/V2.2.1/r_with_packages_4.3.2.sif b/V2.2.1/r_with_packages_4.3.2.sif deleted file mode 120000 index 98ce91da29a337b431a0360a8d0f5c8d299f5785..0000000000000000000000000000000000000000 --- a/V2.2.1/r_with_packages_4.3.2.sif +++ /dev/null @@ -1 +0,0 @@ -/archive/CRI/shared/Singularity/zzy/r_with_packages_4.3.2.sif \ No newline at end of file diff --git a/V2.2.1/data_template_V2.2.xlsx b/V2.2.3/data_template_V2.2.xlsx similarity index 100% rename from V2.2.1/data_template_V2.2.xlsx rename to V2.2.3/data_template_V2.2.xlsx diff --git a/V2.2.1/oda_analysis.sh b/V2.2.3/oda_analysis.sh similarity index 100% rename from V2.2.1/oda_analysis.sh rename to V2.2.3/oda_analysis.sh diff --git a/V2.2.3/r4.4.2_with_packages0.2.sif b/V2.2.3/r4.4.2_with_packages0.2.sif new file mode 120000 index 0000000000000000000000000000000000000000..b9b8c6478e9e07ddeea4a6810989060845fd57d7 --- /dev/null +++ b/V2.2.3/r4.4.2_with_packages0.2.sif @@ -0,0 +1 @@ +/archive/CRI/shared/Singularity/zzy/r4.4.2_with_packages0.2.sif \ No newline at end of file diff --git a/V2.2.1/run_analysis.sh b/V2.2.3/run_analysis.sh similarity index 54% rename from V2.2.1/run_analysis.sh rename to V2.2.3/run_analysis.sh index 9ba232e423c5d831a9f5d5353592a3cb606a5080..19f6c6fef9b4160956683f0550e5eb98c060e55d 100644 --- a/V2.2.1/run_analysis.sh +++ b/V2.2.3/run_analysis.sh @@ -1,10 +1,10 @@ #!/bin/bash module load singularity/3.9.9 #Change this to your own command if required for running singularity on your computer. ODA_DIR=$1 -ODA_MODULE=$ODA_DIR/r_with_packages_4.3.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif +ODA_MODULE=$ODA_DIR/r4.4.2_with_packages0.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r4.4.2_with_packages0.1.sif INPUT_FILE=$2 OUTPUT_FOLDER=$3 echo $ODA_MODULE -#singularity exec $ODA_MODULE Rscript /ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for a released version. +#singularity exec $ODA_MODULE Rscript /ODA_V2.2.2/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for a released version. singularity exec $ODA_MODULE Rscript $1/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for debugging.