From 266e1cb48f5e74ba661555c93d2d74a934256807 Mon Sep 17 00:00:00 2001
From: Zhiyu <zhiyu.zhao@utsouthwestern.edu>
Date: Thu, 27 Mar 2025 20:18:31 -0500
Subject: [PATCH] 032725
---
V2.2.1/r_with_packages_4.3.2.sif | 1 -
{V2.2.1 => V2.2.3}/data_template_V2.2.xlsx | Bin
{V2.2.1 => V2.2.3}/oda_analysis.sh | 0
V2.2.3/r4.4.2_with_packages0.2.sif | 1 +
{V2.2.1 => V2.2.3}/run_analysis.sh | 4 ++--
5 files changed, 3 insertions(+), 3 deletions(-)
delete mode 120000 V2.2.1/r_with_packages_4.3.2.sif
rename {V2.2.1 => V2.2.3}/data_template_V2.2.xlsx (100%)
rename {V2.2.1 => V2.2.3}/oda_analysis.sh (100%)
create mode 120000 V2.2.3/r4.4.2_with_packages0.2.sif
rename {V2.2.1 => V2.2.3}/run_analysis.sh (54%)
diff --git a/V2.2.1/r_with_packages_4.3.2.sif b/V2.2.1/r_with_packages_4.3.2.sif
deleted file mode 120000
index 98ce91d..0000000
--- a/V2.2.1/r_with_packages_4.3.2.sif
+++ /dev/null
@@ -1 +0,0 @@
-/archive/CRI/shared/Singularity/zzy/r_with_packages_4.3.2.sif
\ No newline at end of file
diff --git a/V2.2.1/data_template_V2.2.xlsx b/V2.2.3/data_template_V2.2.xlsx
similarity index 100%
rename from V2.2.1/data_template_V2.2.xlsx
rename to V2.2.3/data_template_V2.2.xlsx
diff --git a/V2.2.1/oda_analysis.sh b/V2.2.3/oda_analysis.sh
similarity index 100%
rename from V2.2.1/oda_analysis.sh
rename to V2.2.3/oda_analysis.sh
diff --git a/V2.2.3/r4.4.2_with_packages0.2.sif b/V2.2.3/r4.4.2_with_packages0.2.sif
new file mode 120000
index 0000000..b9b8c64
--- /dev/null
+++ b/V2.2.3/r4.4.2_with_packages0.2.sif
@@ -0,0 +1 @@
+/archive/CRI/shared/Singularity/zzy/r4.4.2_with_packages0.2.sif
\ No newline at end of file
diff --git a/V2.2.1/run_analysis.sh b/V2.2.3/run_analysis.sh
similarity index 54%
rename from V2.2.1/run_analysis.sh
rename to V2.2.3/run_analysis.sh
index 9ba232e..19f6c6f 100644
--- a/V2.2.1/run_analysis.sh
+++ b/V2.2.3/run_analysis.sh
@@ -1,10 +1,10 @@
#!/bin/bash
module load singularity/3.9.9 #Change this to your own command if required for running singularity on your computer.
ODA_DIR=$1
-ODA_MODULE=$ODA_DIR/r_with_packages_4.3.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r_w_packages_4.3.2.sif
+ODA_MODULE=$ODA_DIR/r4.4.2_with_packages0.2.sif #Link to: /archive/CRI/shared/Singularity/zzy/r4.4.2_with_packages0.1.sif
INPUT_FILE=$2
OUTPUT_FOLDER=$3
echo $ODA_MODULE
-#singularity exec $ODA_MODULE Rscript /ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for a released version.
+#singularity exec $ODA_MODULE Rscript /ODA_V2.2.2/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for a released version.
singularity exec $ODA_MODULE Rscript $1/ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER #Use this for debugging.
--
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