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Commit ce4ac714 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Make CI astrocyte cli check

parent d1af4332
1 merge request!3Develop
Pipeline #3416 failed with stage
before_script:
- module load python/3.6.1-2-anaconda
- module load nextflow/0.27.6
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger_count/*fastq.gz test_data/
- module load nextflow/0.31.1_Ignite
stages:
- integration
- astrocyte
simple_test:
stage: integration
astrocyte_check:
stage: astrocyte
script:
- nextflow run workflow/main.nf
- astrocyte_cli check ../tcga_shiny
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