From ce4ac714a6b58e9fa721183b312f5b66f5b0a3f6 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 4 Apr 2019 12:56:43 -0500
Subject: [PATCH] Make CI astrocyte cli check

---
 .gitlab-ci.yml | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 08bb4e9..11033ac 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,12 +1,12 @@
 before_script:
   - module load python/3.6.1-2-anaconda
-  - module load nextflow/0.27.6
-  - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger_count/*fastq.gz test_data/
+  - module load nextflow/0.31.1_Ignite
 
 stages:
-  - integration
+  - astrocyte
 
-simple_test:
-  stage: integration
+astrocyte_check:
+  stage: astrocyte
   script:
-  - nextflow run workflow/main.nf
+  - astrocyte_cli check ../tcga_shiny
+
-- 
GitLab